FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | he_in180bp_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 165090082 |
| Filtered Sequences | 0 |
| Sequence length | 100 |
| %GC | 37 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
![[WARN]](Icons/warning.png)
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGGCC | 27297455 | 4.4083962 | 6.753119 | 4 |
| GGCCT | 27248630 | 4.405466 | 6.296529 | 6 |
| CGCGC | 14592925 | 3.9105976 | 4.933435 | 6 |
| GCGCG | 14542255 | 3.8902445 | 4.9358234 | 25-29 |
| AGCGC | 21761125 | 3.514308 | 5.181614 | 4 |
| GCGCT | 20957960 | 3.3884118 | 4.197989 | 7 |
| GCGCC | 12215960 | 3.2736208 | 4.3651156 | 15-19 |
| CACGT | 32360215 | 3.1584349 | 3.9180355 | 5 |
| GGCGC | 11700105 | 3.1299322 | 3.9992266 | 50-54 |
| ACGTG | 31194115 | 3.0393276 | 3.7371948 | 6 |
| AGTCC | 30944705 | 3.0202777 | 3.8059008 | 3 |