FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | he_in180bp_1.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 165090082 |
| Filtered Sequences | 0 |
| Sequence length | 100 |
| %GC | 37 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
![[WARN]](Icons/warning.png)
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGGCC | 27922905 | 4.474077 | 6.6418395 | 4 |
| GGCCT | 27835010 | 4.464202 | 6.401457 | 6 |
| CGCGC | 14717660 | 3.905474 | 4.912562 | 25-29 |
| GCGCG | 14756375 | 3.8979793 | 5.008568 | 25-29 |
| AGCGC | 21755585 | 3.4858897 | 5.025947 | 4 |
| GCGCT | 20985910 | 3.3657382 | 4.1661787 | 7 |
| GCGCC | 12195890 | 3.2362978 | 4.2501516 | 15-19 |
| CACGT | 32552835 | 3.1668267 | 3.9193087 | 5 |
| GGCGC | 11873690 | 3.1365016 | 3.9907246 | 50-54 |
| ACGTG | 31134620 | 3.0151155 | 3.8033173 | 6 |