FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | 600bp_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 12354775 |
| Filtered Sequences | 0 |
| Sequence length | 101 |
| %GC | 39 |
![[FAIL]](Icons/error.png)
Per base sequence quality
Per sequence quality scores
Per base sequence content
![[WARN]](Icons/warning.png)
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GGCCT | 3130615 | 5.548993 | 9.20329 | 3 |
| AGGCC | 3091550 | 5.441085 | 8.600624 | 2 |
| CACGT | 3746870 | 4.3825135 | 6.8143945 | 4 |
| ACGTG | 3669830 | 4.2822685 | 7.156758 | 5 |
| GCCTT | 2849365 | 3.3564332 | 5.8887825 | 4 |
| AAGGC | 2777440 | 3.2180836 | 6.1147933 | 1 |
| GGCGC | 1173855 | 3.1307874 | 4.315023 | 50-54 |
| GCGCC | 1149745 | 3.0737417 | 3.9401164 | 15-19 |
| GCCTG | 1699760 | 3.0128129 | 4.0566707 | 5 |
| CGCGC | 1126320 | 3.0111175 | 4.2457604 | 45-49 |