##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 600bp_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12354775 Filtered Sequences 0 Sequence length 101 %GC 39 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.062914864900414 34.0 33.0 34.0 31.0 34.0 2 33.28192759479634 34.0 33.0 34.0 31.0 34.0 3 33.33623307587552 34.0 33.0 34.0 31.0 34.0 4 36.61337766167332 37.0 37.0 37.0 35.0 37.0 5 36.617597001968875 37.0 37.0 37.0 35.0 37.0 6 36.64592402532624 37.0 37.0 37.0 36.0 37.0 7 36.63368171415505 37.0 37.0 37.0 36.0 37.0 8 36.609824541523416 37.0 37.0 37.0 35.0 37.0 9 38.50552956245662 39.0 39.0 39.0 38.0 39.0 10-14 38.730682509394136 39.4 39.2 39.4 37.2 39.4 15-19 39.840969228496675 41.0 40.0 41.0 38.0 41.0 20-24 39.775989105426845 41.0 40.0 41.0 38.0 41.0 25-29 39.52377146487896 40.6 39.2 41.0 37.8 41.0 30-34 39.20671206072146 40.0 39.0 41.0 37.0 41.0 35-39 39.00319138146992 40.0 38.8 41.0 36.6 41.0 40-44 38.60346190035837 40.0 38.0 41.0 35.2 41.0 45-49 38.08433765892135 39.8 37.8 40.8 34.2 41.0 50-54 37.358279580162325 39.0 37.0 40.0 33.0 41.0 55-59 36.813144909559256 38.6 35.6 40.0 31.8 41.0 60-64 35.62448886361751 37.6 34.4 39.6 29.8 40.6 65-69 34.42901111513565 36.0 33.4 38.8 28.0 40.0 70-74 32.99625223445996 35.0 31.8 37.2 25.8 39.2 75-79 31.510210230457453 34.0 30.6 35.8 23.0 38.2 80-84 30.008595672523377 33.6 29.2 35.0 18.4 36.4 85-89 28.5087662867191 32.6 27.4 34.6 7.4 35.4 90-94 26.655722099350253 31.6 24.8 34.0 2.0 35.0 95-99 23.855189252738313 30.6 11.8 34.0 2.0 35.0 100-101 18.903689140433556 24.5 2.0 32.0 2.0 34.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 14288.0 3 4320.0 4 3422.0 5 3586.0 6 3931.0 7 4267.0 8 4571.0 9 5480.0 10 6162.0 11 7210.0 12 8086.0 13 9419.0 14 10738.0 15 12299.0 16 13910.0 17 16204.0 18 19050.0 19 22400.0 20 27218.0 21 33002.0 22 39647.0 23 48895.0 24 60930.0 25 74231.0 26 93447.0 27 118653.0 28 153055.0 29 201797.0 30 271581.0 31 376008.0 32 539743.0 33 806049.0 34 1253271.0 35 2033336.0 36 3035195.0 37 2495437.0 38 515738.0 39 8191.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.326268833861906 47.084029098923594 16.921972175423882 12.667729891790616 2 17.67242614424753 34.96716937507113 31.30146201874144 16.0589424619399 3 19.181304111327684 30.242533689056966 34.96542055469575 15.610741644919607 4 19.57595675582571 30.65010094629615 32.66445366980642 17.109488628071723 5 20.085512666835946 33.578594944144314 28.34974863666279 17.98614375235695 6 19.90979196302644 32.80949268602625 25.394060191302554 21.886655159644754 7 20.192663838648873 30.39000776399024 30.54357968515368 18.87374871220721 8 17.991456744457103 30.586967387103364 30.36804798144847 21.05352788699106 9 19.82466555051297 29.86488464127401 29.79799312500263 20.51245668321039 10-14 18.924514259366685 30.562889070150568 31.339165256830615 19.173431413652132 15-19 19.440101559245885 30.160858798555545 30.525585609591015 19.87345403260755 20-24 19.65648454260252 30.316447117208412 30.525789860739334 19.50127847944973 25-29 20.00183484982036 29.886962793037082 29.930358755878572 20.180843601263984 30-34 19.92174978233564 29.789291381397966 30.36163196375594 19.927326872510452 35-39 20.12159800459073 29.842130686602196 29.678128680857906 20.358142627949167 40-44 19.974246069909572 29.843615853986353 30.16416637026535 20.017971705838722 45-49 20.186932059109758 29.85077956569367 29.799350649014244 20.162937726182324 50-54 19.98372592229433 29.87162604207294 30.15472175545957 19.989926280173158 55-59 20.083605754039453 29.955533500619957 29.802013406467527 20.158847338873066 60-64 20.048619837493327 30.091221364987547 29.945953711270125 19.914205086249005 65-69 20.24638962237924 29.8788022100822 29.698468081032374 20.176340086506183 70-74 19.843347831310794 30.19741063159041 29.775684055962092 20.183557481136706 75-79 19.84876757907444 30.143152116017607 30.087351633161312 19.920728671746645 80-84 19.834450274125523 30.000838711286843 30.1564818986727 20.008229115914936 85-89 20.137604555404994 29.634845190990028 29.959591138816766 20.26795911478821 90-94 19.98573360502208 29.2307518968722 30.24836086118272 20.535153636923003 95-99 20.163233658628496 29.303138077613383 30.115162119000605 20.418466144757517 100-101 21.55549160357794 28.756673593688394 28.537118477405848 21.15071632532782 >>END_MODULE >>Per base GC content warn #Base %GC 1 35.993998725652524 2 33.73136860618743 3 34.79204575624728 4 36.68544538389743 5 38.0716564191929 6 41.796447122671196 7 39.06641255085608 8 39.044984631448166 9 40.33712223372336 10-14 38.09794567301882 15-19 39.31355559185344 20-24 39.15776302205225 25-29 40.18267845108434 30-34 39.849076654846094 35-39 40.479740632539894 40-44 39.99221777574829 45-49 40.349869785292086 50-54 39.97365220246749 55-59 40.24245309291252 60-64 39.96282492374233 65-69 40.42272970888543 70-74 40.0269053124475 75-79 39.769496250821085 80-84 39.84267939004046 85-89 40.4055636701932 90-94 40.52088724194508 95-99 40.58169980338601 100-101 42.70620792890576 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 514.0 1 305.0 2 79.0 3 61.5 4 69.0 5 71.5 6 86.0 7 102.5 8 124.0 9 206.0 10 317.0 11 448.0 12 754.5 13 1217.5 14 1851.0 15 2692.5 16 4046.0 17 6271.0 18 9357.5 19 14011.0 20 21043.5 21 30431.5 22 42501.0 23 58172.5 24 78039.0 25 106288.5 26 134059.0 27 161155.5 28 197897.5 29 242604.0 30 294548.0 31 352930.0 32 421849.5 33 502621.5 34 579636.0 35 628356.0 36 641184.5 37 621968.0 38 577761.0 39 520847.0 40 462545.0 41 408983.0 42 362732.5 43 328538.0 44 315588.0 45 331696.5 46 375611.5 47 436097.0 48 491337.0 49 516950.0 50 497797.0 51 434233.5 52 344891.0 53 256312.5 54 182115.0 55 124564.5 56 83510.0 57 54605.0 58 34597.5 59 21254.0 60 12297.5 61 7133.5 62 4282.0 63 2719.0 64 1878.5 65 1385.0 66 1032.5 67 801.5 68 645.5 69 523.5 70 390.5 71 304.5 72 262.5 73 202.5 74 161.0 75 131.0 76 106.0 77 76.0 78 54.5 79 40.0 80 33.0 81 27.0 82 18.0 83 15.5 84 14.0 85 13.0 86 13.5 87 9.0 88 4.0 89 4.0 90 5.0 91 4.0 92 2.0 93 1.5 94 1.5 95 1.5 96 1.0 97 0.0 98 0.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.06527031046700567 2 0.0061595617888630105 3 0.0049778324574911315 4 0.0015054907920217082 5 0.0028167247076535187 6 0.0 7 0.00245249306442246 8 0.0 9 0.003585658176696864 10-14 0.003103253600328618 15-19 0.0017240297779603433 20-24 0.003962840278353915 25-29 0.005102480619841316 30-34 0.00536148978836118 35-39 0.00532425722038645 40-44 0.0037750586311770147 45-49 0.008293149814545387 50-54 0.0052562673136499856 55-59 0.001382461436974773 60-64 0.003854380189036223 65-69 0.0030336448862889045 70-74 3.253802679530789E-4 75-79 3.496623775018161E-4 80-84 8.612054853285471E-4 85-89 7.770275055595914E-5 90-94 0.0011914421751913734 95-99 0.0025350522368881665 100-101 1.4973967555054625E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1.2354775E7 >>END_MODULE >>Sequence Duplication Levels warn #Total Duplicate Percentage 36.186956541358136 #Duplication Level Relative count 1 100.0 2 10.467550099704422 3 4.050403767554342 4 2.5831223748037733 5 1.943882674058465 6 1.496273458824195 7 1.3986904071617474 8 1.1405903067502015 9 1.0316932780834123 10++ 17.312506187331174 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position GGCCT 3130615 5.548993 9.20329 3 AGGCC 3091550 5.441085 8.600624 2 CACGT 3746870 4.3825135 6.8143945 4 ACGTG 3669830 4.2822685 7.156758 5 GCCTT 2849365 3.3564332 5.8887825 4 AAGGC 2777440 3.2180836 6.1147933 1 GGCGC 1173855 3.1307874 4.315023 50-54 GCGCC 1149745 3.0737417 3.9401164 15-19 GCCTG 1699760 3.0128129 4.0566707 5 CGCGC 1126320 3.0111175 4.2457604 45-49 >>END_MODULE