FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | 600bp_1.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 12354775 |
| Filtered Sequences | 0 |
| Sequence length | 101 |
| %GC | 40 |
![[FAIL]](Icons/error.png)
Per base sequence quality
Per sequence quality scores
Per base sequence content
![[WARN]](Icons/warning.png)
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GGCCT | 3022755 | 5.3064914 | 8.288268 | 3 |
| AGGCC | 3067805 | 5.2737517 | 7.8425975 | 2 |
| CACGT | 3602640 | 4.2077465 | 6.785112 | 4 |
| ACGTG | 3490440 | 4.012658 | 7.152729 | 5 |
| GCCTT | 2725545 | 3.2508326 | 5.5056734 | 7 |
| GGCGC | 1227585 | 3.171899 | 4.209604 | 50-54 |
| AAGGC | 2766470 | 3.114336 | 5.6375046 | 1 |
| CGCGC | 1154790 | 3.0314298 | 4.4239883 | 90-94 |
| GCCTG | 1717760 | 3.015553 | 3.941014 | 5 |
| GCGCC | 1148580 | 3.015128 | 3.810545 | 15-19 |
| GCGCG | 1164435 | 3.0087287 | 4.256458 | 40-44 |
| GGGGG | 972795 | 2.435206 | 8.276648 | 95-97 |